Interproscan manual

InterProScan¶ InterProScan 5: genome-scale protein function classification Philip Jones, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, John Maslen, Alex Mitchell, Gift Nuka, Sebastien Pesseat, Antony F. Quinn, Amaia Sangrador-Vegas, Maxim Scheremetjew, Siew-Yit Yong, Rodrigo Lopez, Sarah Hunter Estimated Reading Time: 3 mins. interproscan/5 ¶. interproscan/5. ¶. Software package that allows sequences (protein and nucleic) to be scanned against InterPro’s signatures. Use the module system to load this version of interproscan: module load midway2; module load interproscan/5. All versions available for interproscan. Full list of software modules available on Midway. Run InterProScan. There are two options to run InterProScan in Blast2GO, either with CloudIPS or via the public web service at EBI. CloudIPS is a cloud-based Blast2GO PRO community resource for fast and reliable InterPro analysis for everything from small to big data-sets.

Run InterProScan. There are two options to run InterProScan in Blast2GO, either with CloudIPS or via the public web service at EBI. CloudIPS is a cloud-based Blast2GO PRO community resource for fast and reliable InterPro analysis for everything from small to big data-sets. System requirements. Obtaining the lookup service. Run with graphical user interface (to set port number) Run “Headless” (no graphical user interface) Waiting for the lookup service to start. Testing the service. Configure InterProScan 5 to use your local lookup service. Running InterProScan 5 in Cluster Mode. Initial Setup. Welcome to InterProScanXX-XX.X usage: java -XX:+UseParallelGC -XX:+AggressiveOpts -XX:+UseFastAccessorMethods -XmsM -XmxM -jar interproscanjar Please give us your feedback by sending an email to interhelp@www.doorway.ru -appl,--applications Optional, comma separated list of analyses.

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